Prepare TIMA annotations
Usage
prepare_tima_annotations(
annotations = NULL,
predicted_classes = FALSE,
min_score_initial = 0,
min_score_biological = 0,
min_score_chemical = 0,
min_score_final = 0,
min_matched_peaks_absolute = 0L,
min_matched_peaks_percentage = 0,
min_peaks = 3L,
libraries = c("gnps", "massbank", "merlin", "ISDB", "ISDB - Wikidata", "TIMA MS1"),
show_example = FALSE
)Arguments
- annotations
annotations
- predicted_classes
Show predicted classes? Default to FALSE
- min_score_initial
Minimal initial score
- min_score_biological
Minimal biological score
- min_score_chemical
Minimal chemical score
- min_score_final
Minimal final score
- min_matched_peaks_absolute
Minimal number of matched peaks
- min_matched_peaks_percentage
Minimal percentage of matched peaks
- min_peaks
Minimal number of peaks in spectrum
- libraries
Libraries to consider
- show_example
Show example? Default to FALSE