This vignette describes some basic functions.
Check the raw data and alignment
First, check if the raw data can be aligned to your expectations:
Or, with more details:
How it should not look like (CAD and PDA shifts incorrectly set):
Check the peak integration
Another critical parameter is the peak integration. Below are some illustrations:
Some peaks are still missed but it looks overall correct.
Depending on the runs, this can get slightly better with baseline correction:
We now recommend you to read the next vignette.