A Strategy to Analyze Plant Extracts Taste In Depth.
⚠️ This repository is not maintained and will not be except for extreme interest. It has just been opened for the sake of transparency.
Installation
As the package is not (yet) available on CRAN, you will need to install with:
install.packages(
"sapid",
repos = c(
"https://adafede.r-universe.dev",
"https://bioc.r-universe.dev",
"https://cloud.r-project.org"
)
)
Main Citations
SAPID
Preprint: upcoming
According to which steps you used, please give credit to the authors of the tools/resources used.
SIRIUS
General: https://doi.org/10.1038/s41592-019-0344-8
- CSI:FingerId: https://doi.org/10.1073/pnas.1509788112
- ZODIAC: https://doi.org/10.1038/s42256-020-00234-6
- CANOPUS: https://doi.org/10.1038/s41587-020-0740-8
- COSMIC: https://doi.org/10.1038/s41587-021-01045-9
LOTUS
General: https://doi.org/10.7554/eLife.70780
⚠️ Do not forget to cite which version you used: https://doi.org/10.5281/zenodo.5794106
ISDB
General: https://doi.org/10.1021/acs.analchem.5b04804
⚠️ Do not forget to cite which version you used: https://doi.org/10.5281/zenodo.5607185
TIMA
General: https://doi.org/10.3389/fpls.2019.01329
⚠️ Do not forget to cite which version you used: https://doi.org/10.5281/zenodo.5797920
Others
- AlpsNMR: https://doi.org/10.1093/bioinformatics/btaa022
- FactoMineR: https://doi.org/10.18637/jss.v025.i01
- SensoMineR: https://cran.r-project.org/package=SensoMineR
- The RforMassSpectrometry packages suite for MS2 matching: https://doi.org/10.3390/metabo12020173
- NPClassifier: https://doi.org/10.1021/acs.jnatprod.1c00399